PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco026269.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

YABBY

Protein Properties

Length: 50aa MW: 5383.98 Da PI: 7.5231

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco026269.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	55.5	2.4e-17	1	32	135	166
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPki 166 eeiqrik+++P i+h+ afs+aaknWahfP+i Aco026269.1 1 EEIQRIKTKDPTITHKAAFSTAAKNWAHFPRI 32 8*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.0E-16	1	33	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 50 aa Download sequence Send to blast
EEIQRIKTKD PTITHKAAFS TAAKNWAHFP RIPAKGDGES CSVSGEEKD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020099516.1	4e-28	protein YABBY 7-like
TrEMBL	F1AM02	6e-15	F1AM02_ANNCH; Transcription factor INO
STRING	XP_008812180.1	1e-14	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-13	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aco026269.1