PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco026491.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LSD

Protein Properties

Length: 317aa MW: 32720.2 Da PI: 8.5811

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco026491.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.4	3.2e-10	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l sYP GA +V+Ca+C +V Aco026491.1 44 CGSCRELVSYPKGAVHVQCACCRAV 68 ***********************98 PP
2	zf-LSD1	38.6	1.8e-12	106	130	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+YP+GAp+VRC++C +V Aco026491.1 106 CGKCSLLLMYPYGAPAVRCSSCYHV 130 **********************998 PP
3	zf-LSD1	38.5	1.9e-12	244	268	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+YP+GAp+VRC+ C +V Aco026491.1 244 CGKCSLLLMYPYGAPAVRCSFCYHV 268 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	3.4E-6	25	33	No hit	No description
TIGRFAMs	TIGR01053	1.3E-13	41	71	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-9	44	68	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.4E-8	104	131	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-9	106	130	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.5E-8	242	269	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-9	244	268	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MMGSSPETSP PPGFEILDPS PPPPPPPPPP PPPPPLPEMG QMVCGSCREL VSYPKGAVHV 60 QCACCRAVNF VLEGSIINIS HSGVASSSSS SSSPSSAAHQ VGNIKCGKCS LLLMYPYGAP 120 AVRCSSCYHV TEIGVGAAVA CDRDDGELPG DVPSPGLRNP RPFSSAASAE APFSASASAS 180 ASSPRNGSNG LRKLSRACFL SERRCSRSVR LLSSSKLRFR RVASSSSSSS SPSSAAHQVG 240 NVKCGKCSLL LMYPYGAPAV RCSFCYHVTE IGVAHNSWPS LSGQQGQTAP SLPSFSAGVV 300 KLRCIRAYAL HEASSE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081920.1	1e-52	protein LOL2 isoform X2
STRING	XP_008776177.1	2e-30	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-24	lsd one like 2

Link Out ? help Back to Top
Phytozome	Aco026491.1