PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco026820.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 260aa MW: 29277.1 Da PI: 7.141

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco026820.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l +++ +G g+W++++r g+ R++k+c++rw +yl Aco026820.1 14 RGLWSPEEDEKLRKYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-26	6	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.808	9	65	IPR017930	Myb domain
SMART	SM00717	2.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.84E-23	14	100	IPR009057	Homeodomain-like
CDD	cd00167	1.88E-12	17	61	No hit	No description
SMART	SM00717	7.3	66	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-8	79	104	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.786	79	99	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGHHSCCNKQ KVRRGLWSPE EDEKLRKYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHQEETLIIA KHLPGRTDNE VKNFWNSTIK KKLISHAVDG LNLIPSPDSY 120 YIPDGVATTR GYDGQCMAGY AVETTIAPSI TRAHLYGSLW PSNPQQFNLL DCDRQNVKDY 180 STLNFCSENT INTLLTETKC ADVKLVDGYD QPIEIEKCTV PLLSASNEID PNAHVSAYFR 240 AQPCVSDLLQ ESIGPGDFFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-19	14	103	7	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020080624.1	0.0	myb-related protein 330-like isoform X1
Refseq	XP_020098119.1	0.0	myb-related protein 330-like isoform X2
TrEMBL	A0A199VPE2	1e-120	A0A199VPE2_ANACO; Transcription factor MYB26
STRING	XP_008775155.1	1e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12813	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-62	myb domain protein 26

Link Out ? help Back to Top
Phytozome	Aco026820.1