PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026878.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 250aa    MW: 27829.3 Da    PI: 8.076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026878.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-0982111130
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                  +r++h ++Er+RR+ +N+ ++ Lr+l+P +
  Aco026878.1  82 QRMTHIAVERNRRRLMNDHLAVLRSLMPDS 111
                  79**************************85 PP
2HLH29.61.3e-09121151131
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkas 31 
                  +r++h ++Er+RR+ +N+ ++ Lr+l+P ++
  Aco026878.1 121 QRMTHIAVERNRRRLMNDHLAVLRSLMPDSY 151
                  79**************************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-873112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-780115No hitNo description
Gene3DG3DSA:4.10.280.105.0E-880115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-682111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.287122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-8119170No hitNo description
Gene3DG3DSA:4.10.280.101.2E-8119156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-9120186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.338120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-7121151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.085126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSTLGGLCS SELPSFFIYD TINATQLHYT NPSESAAVLG PAPPEAAAAA AVEQQQMRVQ  60
GGKRKRRRRP RSGGSKEEVE SQRMTHIAVE RNRRRLMNDH LAVLRSLMPD SYIQREEVES  120
QRMTHIAVER NRRRLMNDHL AVLRSLMPDS YIQRGDQLNV GGAIDYVKEH GAYSSSLDAL  180
QKEDHYCCST RSSKHPLTHN DGSCAISPPF RPSFFACTPS IPCCATGLAK DYPFPRESDP  240
PWPDIEVTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267KRKRRR
26268KRKRRRR
36367RKRRR
46370RKRRRRPR
5121132RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376083e-33AC137608.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0009C07, complete sequence.
GenBankAP0149613e-33AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-33CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A199VZF47e-66A0A199VZF4_ANACO; Transcription factor bHLH96
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.13e-23bHLH family protein