PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026992.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 220aa    MW: 24492.7 Da    PI: 7.9097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026992.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-054365123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  Aco026992.1 43 YTCSFCKREFRSAQALGGHMNVH 65
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-64069No hitNo description
SMARTSM003550.00384365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.244370IPR007087Zinc finger, C2H2
PfamPF139121.4E-64366IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDRFGRSSRA NNELWRYNQV GREGVDPLYG GFLGGLSWPP RSYTCSFCKR EFRSAQALGG  60
HMNVHRRDRA RLRQSPPWDT SIPNPNPNPS PNLHLHDGSK PNIPNLNLAP PPNSTTNIDA  120
KFCPATYTFS SLLSPLSFPR VSSSEPRCSN RDELSPVEVA KELFGAGRSK DLMVEKNGGA  180
KEEVVGLDME VTMCNDLEDD MMHFPMHGLV IFSFKPLMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-143865229superman protein
2l1o_A7e-143865229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084279.11e-147transcriptional regulator SUPERMAN-like
TrEMBLA0A199UD781e-145A0A199UD78_ANACO; Transcriptional regulator SUPERMAN
STRINGXP_008794310.18e-58(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-23C2H2 family protein