PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco027010.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 301aa MW: 32773.7 Da PI: 9.0917

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco027010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.8	1.8e-22	32	77	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++sl+++sk Fslpi++AA+ Lgvc++vLKriCR +GI+RWP+Rk Aco027010.1 32 VKLSLDEISKLFSLPIAEAASILGVCTSVLKRICRDNGIARWPYRK 77 589******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.244	15	100	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-20	34	78	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MASTSASETT APPQQQQQQQ QQPAAPHSQS KVKLSLDEIS KLFSLPIAEA ASILGVCTSV 60 LKRICRDNGI ARWPYRKFLV GKTFEDIKRD AEREKTKESA DSSKKTKQKA DATKAMPANS 120 VGSSSTFEDQ NNSKSQSGVP THSHILQQGV RFAQGVSPNN MLHLSQIRNI PTFMDEFKYG 180 FPTRGLSSLS NKWWGSGNSD SSPLKSSAVK DESQESCELS NETSKCTMDD MADSGTEDSA 240 ATSVPSAVLC SLRRKALEDG RGLLKDGACN GCELHKLNKR QRLVLAQVFG SSLPDKWKDR 300 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665062	1e-161	KM665062.1 Ananas bracteatus clone 50155b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098046.1	0.0	protein NLP3-like
TrEMBL	A0A199W625	0.0	A0A199W625_ANACO; Protein RKD5
STRING	XP_008784393.1	9e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco027010.1