PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027420.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25238.5 Da    PI: 6.3075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1994148256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keql  Le+ F+ ++++   +++eLA++l+L  rqV vWFqNrRa+ k
  Aco027420.1  94 RKKLRLSKEQLALLEDSFRAHNTLYPVQKQELAQQLNLRPRQVEVWFQNRRARCK 148
                  788899***********************************************98 PP
2HD-ZIP_I/II125.72.1e-4094184191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq++lLE+sF+++++L p +K+ela++L+l+prqv+vWFqnrRAR k+kq+E+d+e+Lkr++++l++en+rL++e  eLr+++
  Aco027420.1  94 RKKLRLSKEQLALLEDSFRAHNTLYPVQKQELAQQLNLRPRQVEVWFQNRRARCKLKQTEVDCEYLKRCCESLTDENHRLKRELMELRSAM 184
                  69**************************************************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1874148IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1984151IPR009057Homeodomain-like
PROSITE profilePS5007116.87690150IPR001356Homeobox domain
SMARTSM003891.2E-1692154IPR001356Homeobox domain
CDDcd000864.03E-1594151No hitNo description
PfamPF000462.9E-1694148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
SMARTSM003408.1E-18150193IPR003106Leucine zipper, homeobox-associated
PfamPF021833.8E-11150183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGEEECNIAL SLAIGGCAGE FTSSRSCSAK PPVLFHILFP SQKREEGQQR EEEEEEEEEE  60
EKKGEEDGGW IERKRSKSED SSKGASDANG GGARKKLRLS KEQLALLEDS FRAHNTLYPV  120
QKQELAQQLN LRPRQVEVWF QNRRARCKLK QTEVDCEYLK RCCESLTDEN HRLKRELMEL  180
RSAMPAVSLP FNVPIPRAVA ALRMCPSCER IATDRDEKRK A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARCKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090360.11e-105homeobox-leucine zipper protein HOX11-like
SwissprotP466654e-52HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A199UQP61e-159A0A199UQP6_ANACO; Homeobox-leucine zipper protein HAT14
STRINGXP_008789723.13e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-54homeobox from Arabidopsis thaliana