PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco027904.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 216aa MW: 22953.6 Da PI: 7.4322

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco027904.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.1e-44	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el+ ++ Aco027904.1 15 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFINVHKVFGASNVTKLLNELLPHQREDAVNSLAYEAEARVKDPVYGCVGAISVLQRQVQRLQKELEIAH 112 7*********************************************************************************************9998 PP DUF260 99 ee 100 + Aco027904.1 113 AD 114 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.484	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-44	15	112	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSSSSSSSSS TSNSPCAACK FLRRKCMPGC IFAPYFPPEE PQKFINVHKV FGASNVTKLL 60 NELLPHQRED AVNSLAYEAE ARVKDPVYGC VGAISVLQRQ VQRLQKELEI AHADLLRYAC 120 GEIPTGHLQQ PQSAQRLGSL YQRSGEYGRR VGNGGGVGGP LFNQGYGVVA SHVPNYPATA 180 TATTTPWCTS ANPSGEGSIS SGDHMDQSEG GESSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-71	5	126	1	125	LOB family transfactor Ramosa2.1
5ly0_B	4e-71	5	126	1	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082802.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020082803.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020097724.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020097726.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020097727.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020104942.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020104943.1	1e-160	LOB domain-containing protein 25-like
Refseq	XP_020104944.1	1e-160	LOB domain-containing protein 25-like
Swissprot	Q9FML4	1e-68	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2H3ZTC7	2e-89	A0A2H3ZTC7_PHODC; LOW QUALITY PROTEIN: LOB domain-containing protein 25-like
STRING	XP_008795982.1	3e-90	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-66	LBD family protein

Link Out ? help Back to Top
Phytozome	Aco027904.1

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]