PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco028478.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family YABBY
Protein Properties Length: 54aa    MW: 5988.82 Da    PI: 6.2121
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco028478.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY28.16.5e-093352524
        YABBY  5 ssseqvCyvqCnfCntilav 24
                 s  e+vCyv+C+fCntil+v
  Aco028478.1 33 SHQEHVCYVHCSFCNTILVV 52
                 6789***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.0E-63452IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
ELQPPESYLV GCGDGEGKWE MFDSAIAKCR SRSHQEHVCY VHCSFCNTIL VVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6636744e-41KM663674.1 Ananas bracteatus clone 48195 microsatellite sequence.