PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco028684.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 274aa    MW: 31074.5 Da    PI: 4.9809
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco028684.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.78.8e-27106166259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK++ ++++prsYYrCt++   gC+++++v+rs++dp++ eitY geH+++
  Aco028684.1 106 DDGYTWRKYGQKVIFSAKHPRSYYRCTYKydkGCQATRQVQRSEDDPTMYEITYIGEHTCR 166
                  8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2696166IPR003657WRKY domain
SuperFamilySSF1182901.02E-24100166IPR003657WRKY domain
PROSITE profilePS5081122.171100163IPR003657WRKY domain
SMARTSM007742.3E-37105167IPR003657WRKY domain
PfamPF031066.0E-26106166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEETAIDELT RGRESTIRLE QFLQKTLPPE AQGPNSTFAG LIGEILGSFD KALSNLDSEG  60
RRSGALLDRR SENFGGKKTI RSGRKGGYRR RAHPYSCTQQ RKRTTDDGYT WRKYGQKVIF  120
SAKHPRSYYR CTYKYDKGCQ ATRQVQRSED DPTMYEITYI GEHTCRDLPD SSIIINFDGT  180
AATNNSNQPQ KVEYFDEEVI SKLVMTGFSS SENLVLQDLM VSMPKVEIAS CGSESTSDLQ  240
SPCGSFDMEF DEQLFDFDDI YSQFRAYPDL ETM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-25103166669OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6633171e-130KM663317.1 Ananas bracteatus clone 47652 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080618.10.0probable WRKY transcription factor 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-32WRKY DNA-binding protein 70