PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco028742.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 90aa MW: 9880.43 Da PI: 10.3705

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco028742.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.4	2.8e-23	35	80	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++sl+++sk Fslpi++AA+ Lgvc++vLKriCR +GI+RWP+Rk Aco028742.1 35 VKLSLDEISKLFSLPIAEAASILGVCTSVLKRICRDNGIARWPYRK 80 589******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.574	18	89	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-21	37	80	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MASTSASETT APPQQLQQQQ QQQQQPAAPH SQSKVKLSLD EISKLFSLPI AEAASILGVC 60 TSVLKRICRD NGIARWPYRK PFILRLLVH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665062	2e-99	KM665062.1 Ananas bracteatus clone 50155b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082169.1	2e-51	protein RKD5-like isoform X1
TrEMBL	A0A199W625	3e-48	A0A199W625_ANACO; Protein RKD5
STRING	Sb03g000260.1	1e-21	(Sorghum bicolor)
STRING	Traes_3AS_D1FC86E9B.1	3e-22	(Triticum aestivum)
STRING	Traes_3B_35879621C.2	6e-22	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco028742.1