PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco028837.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 96aa    MW: 11033.4 Da    PI: 10.3681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco028837.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.77e-172752890
         FAR1 28 itkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 it+ t++Cskeg+ +++ ++           +++++++ +  rtgCka+++v++ ++ kw vt++ +eHnHel 
  Aco028837.1  2 ITSVTYTCSKEGQYNSKLTTqekgdhenlqnDNTSKKEISLRRTGCKAHMRVRLVNTTKWTVTTFTKEHNHELI 75
                 7899*********9998888899999999987888889999*******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-14275IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MITSVTYTCS KEGQYNSKLT TQEKGDHENL QNDNTSKKEI SLRRTGCKAH MRVRLVNTTK  60
WTVTTFTKEH NHELIASPSK ALFLDHTAPS QRNKRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108789.12e-20protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A199VWV35e-65A0A199VWV3_ANACO; Protein FAR1-RELATED SEQUENCE 5