PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco028935.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family E2F/DP
Protein Properties Length: 253aa    MW: 28494.3 Da    PI: 6.2388
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco028935.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.43.3e-25481871
      E2F_TDP  8 lltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                 l++++  +++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Aco028935.1  4 LFCSR--SVCEKVESkGRTTYNEVADELVAEfadpngklaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 81
                 78888..9*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.4E-26281IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094048.4E-1114252IPR015648Transcription factor DP
SuperFamilySSF467857.89E-19682IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.8E-22681IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-39686IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.01E-4486189IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.15E-4487222No hitNo description
SMARTSM011388.2E-7688250IPR014889Transcription factor DP, C-terminal
PfamPF087811.8E-4589223IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFCLFCSRSV CEKVESKGRT TYNEVADELV AEFADPNGKL ASPDQQQYDE KNIRRRVYDA  60
LNVLMAMDII SKDKKEIQWK GLPRTSLNDI EELKAERMAL KNRIEKKTAY LQELQDQFIG  120
LQNLVQRNEH LYGSGNIPSG GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH  180
DDSYVLKAMR FCERGQKEGS CEPSSNGGEC SSTPNTHQHH MPQPTGPDTM AKPPINSPPI  240
PGILKGRVKH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-317861693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080426.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-118DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A199V0R70.0A0A199V0R7_ANACO; Transcription factor-like protein DPB
STRINGXP_010241817.11e-143(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP