PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029012.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 104aa    MW: 11207.9 Da    PI: 6.489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029012.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.4e-122546526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C ++a++G+Ck+G++CkF H+
  Aco029012.1 25 PCTYYAQNGFCKFGPTCKFDHP 46
                 8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0612048IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-52047IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-72149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-62445IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-92446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MAMFHSDMAI RLELDYIQII LGAQPCTYYA QNGFCKFGPT CKFDHPIGTM SYSPSASSLS  60
EMPIAPFPLG FSLTTLPPTS SSSSEFVKES IPTQKILSKN SSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103473.14e-49zinc finger CCCH domain-containing protein 6-like
SwissprotQ5NAV31e-24C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A199VKH19e-48A0A199VKH1_ANACO; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A199VKP51e-47A0A199VKP5_ANACO; Zinc finger CCCH domain-containing protein 6
STRINGcassava4.1_024226m1e-23(Manihot esculenta)
STRINGOPUNC01G09770.13e-23(Oryza punctata)
STRINGXP_010112757.12e-23(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.25e-19C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]