PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco029083.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 285aa MW: 32579.4 Da PI: 10.5732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco029083.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.6e-17	31	116	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+e+GF v+k+++k + +g+ t +Cs++gk ++ ++ r + ++ +t+C a+++v ++d+ +++k+ leHnH+l+p Aco029083.1 31 NFYKHYAQEIGFAVVKRSTKMT--DGKATYVIITCSRHGKMYRTVTN---IRPRPSVAKTNCPARINVVINTDSSCVISKITLEHNHTLSP 116 6*************998887..9999*********999877...77788899****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-14	31	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDEERNSEVR DVNISAPEIG MTFINFDAVL NFYKHYAQEI GFAVVKRSTK MTDGKATYVI 60 ITCSRHGKMY RTVTNIRPRP SVAKTNCPAR INVVINTDSS CVISKITLEH NHTLSPYKSR 120 FFPCNRVIDT SVKRRLDLND RAGIRLNKSF NSILQEKEIE QEHELQHGGK QQALEHLSGP 180 DPEAQVRTLP AYHAERTYGV RILKLRSGPS LRIRKYMVRV PDREAQVRTL SAYHADRTYG 240 VWILKLRSGP SLRIRKYMVR VPDREAQVRT LSAYHKKGPT RSGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081201.1	1e-105	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_020099018.1	1e-102	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A199V0R5	1e-108	A0A199V0R5_ANACO; Protein FAR-RED IMPAIRED RESPONSE 1 (Fragment)
TrEMBL	A0A199VVQ5	1e-110	A0A199VVQ5_ANACO; Protein FAR-RED IMPAIRED RESPONSE 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16056	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	1e-11	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Aco029083.1