PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029085.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 312aa    MW: 33523.9 Da    PI: 4.4758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029085.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012287309223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C+k F++   L+ H +  H
  Aco029085.1 287 TCKSCSKKFNSENALQAHTKAkH 309
                  7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868286312IPR007087Zinc finger, C2H2
PROSITE patternPS000280288309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSFVEINFK PNLSRAGASI IIIIIIIIII LNDDLQASLG EAKKDRGNES VPIYVKFSNQ  60
KLVLGTLSAD KVPQISYDLV FEKEFQLSNS SKNASVYFLG YKTAIADDEE YPFNFAYTDS  120
EDEDIPLGLS ANGKAAKNNA AMVDATAAKP KVKIEEPDKA SSKQAADDEE DDDESEDVSD  180
DEDGDEDRDM VEAEDDSDDE DDGDSSDEEV EEVTPKKAKT GGKKRPAEPA SRSEKKAKLV  240
SPAGSRKTGG DGKVGGHTAT PHPTKQVGKT LVSNKQQQTP KSVGSVTCKS CSKKFNSENA  300
LQAHTKAKHG AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099530.11e-155histone deacetylase HDT1-like
TrEMBLA0A199V6644e-95A0A199V664_ANACO; Histone deacetylase HDT2
STRINGXP_008803802.18e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-21histone deacetylase 3