PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029087.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YC
Protein Properties Length: 281aa    MW: 30485.2 Da    PI: 7.0902
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029087.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC24.55.5e-087381950
        NF-YC 19 helPlarikkilkadedvkmisaeaPvllska 50
                 +++P arikki++adedv +i+  +P l++k 
  Aco029087.1  7 TRFPAARIKKIMQADEDVGKIALAVPLLVCKG 38
                 579*************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-10337IPR009072Histone-fold
SuperFamilySSF471131.74E-5337IPR009072Histone-fold
PfamPF008081.0E-5835IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-567104IPR009072Histone-fold
SuperFamilySSF471131.71E-568107IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPLLVCKGGA VRSASVGVPK LTKLAAPERD  60
IQPNEKKRTY EITLQSGAKT LNSLHLKQCV KMYSAFDFLT DVVNKVPNIG GTEPCGDEKG  120
ISRRRKTLSH DRNLDDNDES RSTKMAMRTS EISPRGRGRG RGRGRGRPPT RAREIGYVKC  180
DDESSIFAEH AAEFCSEHAA DGSEKNTGGD EKIIQSAHPL GNNPASDASA GANVEAVEPN  240
HGECSAWPLP DVAANIGVEP SRFVQLTMQI DEDEDYDNED *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126SRRRKT
2156165RGRGRGRGRG
3156166RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104829.11e-160dr1-associated corepressor-like isoform X1
TrEMBLA0A199W0681e-130A0A199W068_ANACO; Dr1-associated corepressor
STRINGXP_008782237.11e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-38nuclear factor Y, subunit C11