PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029228.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 285aa    MW: 31376.5 Da    PI: 5.993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029228.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1399142755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  e+Er+RR+++N+++  Lr+++P+ +      K++Ka+i + A++YI++Lq
  Aco029228.1  99 EMERNRRRKLNERLYALRSVVPNiS------KMDKASIIKDAIDYIQELQ 142
                  89*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1891157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.28892141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-1595146No hitNo description
SMARTSM003538.0E-1798147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-1199142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1699158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.1E-6204272No hitNo description
CDDcd048730.00186207272No hitNo description
PROSITE profilePS516718.719207284IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAVAFPPKEK RKQKQKQKQK QRKRESGCQN MEEMDPEYNF YWETKRFFEN EELDSMWGLE  60
EAMSSYYDSS SPEGSGSGNS GGGGGGASSS TAAALKSIEM ERNRRRKLNE RLYALRSVVP  120
NISKMDKASI IKDAIDYIQE LQEQERRLLE DLSHLQATAD KKESAAGGAD DFGLSRGRKK  180
MKSTAPASPP VEIVDLGVAE VGDKIMVVSI TCQKRKDTVA KVCEALESLN LKIITANITS  240
VSGSLLHTLF VETGEMDSAQ MKEKIECAIA ELDALRSPTS SMSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1495142754Transcription factor MYC2
5gnj_B1e-1495142754Transcription factor MYC2
5gnj_E1e-1495142754Transcription factor MYC2
5gnj_F1e-1495142754Transcription factor MYC2
5gnj_G1e-1495142754Transcription factor MYC2
5gnj_I1e-1495142754Transcription factor MYC2
5gnj_M1e-1495142754Transcription factor MYC2
5gnj_N1e-1495142754Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1923KRKQKQKQKQKQRKR
21023RKQKQKQKQKQRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110165.10.0transcription factor bHLH35-like
TrEMBLA0A199VRP41e-137A0A199VRP4_ANACO; Transcription factor bHLH35
STRINGXP_008811438.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-47bHLH family protein