PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029272.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 470aa    MW: 51154.8 Da    PI: 4.7778
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029272.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM751.8e-23271523128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                   Gf F Ptde+l+v+yL++ ++g++l+  +++ e+++y+++P++L     +++ e+ yf +kr +   +g+r +r++ +g+W  + k++e++s++ge+
  Aco029272.1  27 LGFAFTPTDEQLIVHYLRAYAAGQSLRW-DHVVEAQVYSTDPRSLL----GDDGEIgYFLTKRTR---HGNRVKRTAGRGTWTGQTKKNEIVSAGGEV 116
                  7**************************9.8899************6....344566477777666...589*************************** PP

          NAM 100 vglkktLvfy.......kgrapkgektdWvmheyrl 128
                  +g k ++ f        + ++p+ + t  vm ey+l
  Aco029272.1 117 IGFKAMFSFCigddddcSSKKPSKKTTGYVMYEYEL 152
                  **********998888778999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-2721160IPR003441NAC domain
PROSITE profilePS5100527.91525177IPR003441NAC domain
PfamPF023654.0E-1428152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAQQCHPSSR GTAPRPSRSQ SEESVALGFA FTPTDEQLIV HYLRAYAAGQ SLRWDHVVEA  60
QVYSTDPRSL LGDDGEIGYF LTKRTRHGNR VKRTAGRGTW TGQTKKNEIV SAGGEVIGFK  120
AMFSFCIGDD DDCSSKKPSK KTTGYVMYEY ELPSTANQGT RQQVRANQRS LARLFPKITF  180
SLISGLNLSN YKQGASQEPV LCCIKKSARE IARSHKRKRE EAARTPAAET DIAASVRDVN  240
NVNLVSDGLL GRTMAADQQQ PIPYHGKNVA TGNADFFEVG ECSYSSTNTE YADSVASADG  300
IKEREMANGD INLACHGALG MTADIDLLPI PYLRKWTETM NADIFYGLRG DVNTGDIGSS  360
TAMEGAGDRQ PPLLSYELNG TTAAAATADQ QLLLAPDQDE RTVVDEAGDW DQLLSVLENE  420
DYSDWFDSVL NDEPSPPPLI DSETPFRNCQ MPPPASSDGA ASFCCDPRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-142116113153NO APICAL MERISTEM PROTEIN
1ut4_B2e-142116113153NO APICAL MERISTEM PROTEIN
1ut7_A2e-142116113153NO APICAL MERISTEM PROTEIN
1ut7_B2e-142116113153NO APICAL MERISTEM PROTEIN
3swm_A2e-142116116156NAC domain-containing protein 19
3swm_B2e-142116116156NAC domain-containing protein 19
3swm_C2e-142116116156NAC domain-containing protein 19
3swm_D2e-142116116156NAC domain-containing protein 19
3swp_A2e-142116116156NAC domain-containing protein 19
3swp_B2e-142116116156NAC domain-containing protein 19
3swp_C2e-142116116156NAC domain-containing protein 19
3swp_D2e-142116116156NAC domain-containing protein 19
4dul_A2e-142116113153NAC domain-containing protein 19
4dul_B2e-142116113153NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.15e-14NAC domain containing protein 19