PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029320.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 167aa    MW: 19180 Da    PI: 9.4877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-203892256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 rk+ ++tk+ql  Le+ F ++++++ ++++eLA+kl+L+ rqV vWFqN+Ra+ k
  Aco029320.1 38 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNKRARSK 92
                 788899***********************************************98 PP
2HD-ZIP_I/II107.97.2e-3538125188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl+k+q++lLE+sF ++++L+++ K+ela++L+l+prqv+vWFqn+RAR k+kq E++ye+Lk+++++l+een++L+++ eeLr
  Aco029320.1  38 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNKRARSKLKQNEVNYEMLKKCCERLSEENQKLKEKLEELR 125
                  69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-201992IPR009057Homeodomain-like
SuperFamilySSF466891.3E-192695IPR009057Homeodomain-like
PROSITE profilePS5007117.0063494IPR001356Homeobox domain
SMARTSM003898.8E-193698IPR001356Homeobox domain
PfamPF000461.8E-173892IPR001356Homeobox domain
CDDcd000863.84E-163895No hitNo description
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
SMARTSM003403.3E-1094137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MINESVGNEN YASLCKSRSR SINNGVESGG EDGKGCTRKK LRLTKDQLAL LESSFVQHNT  60
LNSSMKQELA HKLNLSPRQV EVWFQNKRAR SKLKQNEVNY EMLKKCCERL SEENQKLKEK  120
LEELRLMRLK LPFYVQQYQN EHTLIMCPSC KLKGEDDALA SVKISQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081077.11e-118homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-43HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A199VWQ21e-105A0A199VWQ2_ANACO; Homeobox-leucine zipper protein HAT14
STRINGXP_002530591.15e-43(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-36homeobox from Arabidopsis thaliana