PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030380.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 455aa    MW: 50534 Da    PI: 7.399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.8e-11402451147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r++W+  E+e l + v+++G g+Wk I ++ +   k Rt+ ++k++w+++
      Aco030380.1 402 RKKWSSLEEETLRKSVERHGVGNWKFIKQCHPsifKDRTEVDLKDKWRNL 451
                      789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.797397454IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-11399453IPR009057Homeodomain-like
SuperFamilySSF466892.15E-14399453IPR009057Homeodomain-like
SMARTSM007176.0E-7401454IPR001005SANT/Myb domain
PfamPF002491.5E-8402451IPR001005SANT/Myb domain
CDDcd116603.47E-17403453No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MIDPDVAAWI LDFLLRQTLD DSLVHRLILS LPIPAPSPSS PLHRTLILRR LSSDLSRRSL  60
SPRTLHSLEL LSSLPRPSSA AALRAAYAAV AADLTVKPLR PSSRGGDDDG GGGGGGEGGG  120
EGEFYDAVNR IWNCRVADLE AAAEGVEGAE AAAGLVSPEL RATRREMEEA VVDATVRAGL  180
VARYTEERAL QAVRVYLEEA WKELGPSFLE LAAEALIGMA KGKGLEMENP NSSKPSPEEG  240
SRLLELVNHS GTVNKRGKEI IEENTHENFL FRDHHAFNLW TNDHDAVLQG ESSSPELRDP  300
SSVGWNRMGK CKSTNFRSFE NANESGNRCT KTILKLDRDS AAERRPSMME RNPTARTIEW  360
DDLFGSPLPA NPVEKPHVSY PKKGKDSLFV KDNNQFILRK RRKKWSSLEE ETLRKSVERH  420
GVGNWKFIKQ CHPSIFKDRT EVDLKDKWRN LVRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080994.10.0telomeric repeat-binding factor 2-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1605037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-12MYB_related family protein