PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030792.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 572aa    MW: 63822.3 Da    PI: 6.1716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030792.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.21.8e-1352015711374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L++cA+a++++d+  +++l+++l+ ++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e +   ss+ l+++++++e++P++kf+++ a
  Aco030792.1 201 LKQVLIACARAMAEEDFFVVEWLMSELRPMVSVSGEPIQRLGAYLLEGLVARRASSGSSIYKALKCKEPT---SSDLLSYMHILYEACPYFKFAYMSA 295
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ge++vHiiDf++ qG+QW++L+qaLa+Rp+gpp+++iTg++++ s   +   l+ +g+rL+++Ae+++vpfefn+ +a +  ++e e+L
  Aco030792.1 296 NGAIAEALKGENMVHIIDFQLAQGTQWVSLIQALAARPGGPPRVKITGIDDSVSAyaRGGGLNLVGHRLSRLAESCNVPFEFNA-AAMSGCEVEREHL 392
                  ***************************************************888899999************************.89999******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ ++lh+++desvs++++rd++L+lvksl+Pkvv++veqe+++n+++F+ rfle+l+yy+a+f+s++++lpre+++ri+vE+++l+r
  Aco030792.1 393 AVRPGEALAVNFPFMLHHMPDESVSTANHRDRLLRLVKSLNPKVVTLVEQESNTNTAPFFPRFLETLDYYTAIFESIDVTLPREHKDRISVEQHCLAR 490
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ivn++aceg er+erhe ++kWr+r+++aGFkp+pls+ +++++k+ll+ +    y++ee++g l+lgW drpL + +aWr
  Aco030792.1 491 DIVNIIACEGPERVERHELYGKWRARFMMAGFKPYPLSSLVNATIKTLLQSYCTS-YSLEERDGVLYLGWLDRPLAVSCAWR 571
                  ****************************************************955.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.104175552IPR005202Transcription factor GRAS
PfamPF035146.2E-133201571IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MASRLWRAKS IYESDMTASP IKHSAANISM QSSKQYGYPD NSQKPYYDRK PMSVTEEELH  60
YVPQNHQDLH YLSSDDNSQR GSIPPQKPSQ EQYCTLESSL APPVCTKQNS PPSSVSFSSS  120
SGSPHSQQDS QSDNTYGSPI SVSCITEDPH DLKNKLREIE TAMLGPDSDN IVNSFETSFA  180
SHLSLEPEKW KQVLEIPKGD LKQVLIACAR AMAEEDFFVV EWLMSELRPM VSVSGEPIQR  240
LGAYLLEGLV ARRASSGSSI YKALKCKEPT SSDLLSYMHI LYEACPYFKF AYMSANGAIA  300
EALKGENMVH IIDFQLAQGT QWVSLIQALA ARPGGPPRVK ITGIDDSVSA YARGGGLNLV  360
GHRLSRLAES CNVPFEFNAA AMSGCEVERE HLAVRPGEAL AVNFPFMLHH MPDESVSTAN  420
HRDRLLRLVK SLNPKVVTLV EQESNTNTAP FFPRFLETLD YYTAIFESID VTLPREHKDR  480
ISVEQHCLAR DIVNIIACEG PERVERHELY GKWRARFMMA GFKPYPLSSL VNATIKTLLQ  540
SYCTSYSLEE RDGVLYLGWL DRPLAVSCAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-612035716375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080849.10.0chitin-inducible gibberellin-responsive protein 2-like isoform X1
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A199US670.0A0A199US67_ANACO; Chitin-inducible gibberellin-responsive protein 2
STRINGXP_008800637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]