PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030822.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 345aa    MW: 35257.3 Da    PI: 6.6036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030822.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.82.7e-292233452129
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL ++A av++g+l++a a La ++  asp+gd+ qRlaa+++ ALa+rl    ++ +   p+ +      +e+ +a++l++++sP++k++  +aN
  Aco030822.1 223 RQLLSDAAAAVAEGNLAAAAASLAAVRRAASPRGDAEQRLAAMMAAALASRLDPPAPSGA--HPAADL---FAAEHRFATQLLHDASPCFKLGLAVAN 315
                  6899*************************************************9333332..233333...288999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLl 129
                   aIlea+ g+ ++H++Dfd++ G+Q + L+
  Aco030822.1 316 LAILEAARGHPKLHVVDFDVGSGAQHAELI 345
                  **************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.702196345IPR005202Transcription factor GRAS
PfamPF035149.3E-27223345IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASGFPGRDS RGSYAGFGGG SAVQIPFQGR SDGGGGGGGA GVLKRTLSEM ERRQQQMALQ  60
QALFLRSVKQ KIHMASPLSS DLGSLTSPSS ISSGCLVQGG PQRGWHPAAL ESDRNPKAAT  120
ESAMRNQLHE LERRLLGDDE EELEEATASG SAVTGSEWGE TMRQLISISA APSPSSLPPP  180
PPPMANQSNP LSPSPSPSNS SSSNSTASST ASCSTPPPSN PSRQLLSDAA AAVAEGNLAA  240
AAASLAAVRR AASPRGDAEQ RLAAMMAAAL ASRLDPPAPS GAHPAADLFA AEHRFATQLL  300
HDASPCFKLG LAVANLAILE AARGHPKLHV VDFDVGSGAQ HAELI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-112253458128GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082112.10.0scarecrow-like protein 8, partial
TrEMBLA0A199V7L81e-145A0A199V7L8_ANACO; Scarecrow-like protein 8
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-15SCARECROW-like 8