PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030850.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 109aa    MW: 11952.4 Da    PI: 10.6897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.42.2e-203075147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G ++W++I++ ++ gR++k+c++rw + 
      Aco030850.1 30 KGPWSPEEDEALQRLVQKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 75
                     79******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0032580IPR017930Myb domain
SuperFamilySSF466893.59E-2426104IPR009057Homeodomain-like
SMARTSM007171.7E-172978IPR001005SANT/Myb domain
PfamPF002495.3E-203075IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-233075IPR009057Homeodomain-like
CDDcd001671.90E-163274No hitNo description
Gene3DG3DSA:1.10.10.609.3E-776103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MRNSSGGSSS SSSSSSKEGV GVGVVMDRIK GPWSPEEDEA LQRLVQKHGA RNWSLISKSI  60
PGRSGKSCRL RWCNQLSPQV EHRPFTPDED DAIVRAHRRF GNKALYTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2329103377MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-222910357131MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-222910357131MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-2329103377C-Myb DNA-Binding Domain
1msf_C4e-2329103377C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6614581e-140KM661458.1 Ananas bracteatus clone 43635a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080712.12e-70transcription factor MYB44-like
SwissprotO231609e-44MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A199VPN23e-54A0A199VPN2_ANACO; Transcription factor MYB44
STRINGPOPTR_0007s10490.16e-50(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-45myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]