PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031310.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 257aa    MW: 29496.4 Da    PI: 7.0286
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.8e-28203253151
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQ
  Aco031310.1 203 KARRCWSPELHRRFLDALRQLGGSQAATPKQIRELMKVDGLTNDEVKSHLQ 253
                  68************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.752200256IPR017930Myb domain
SuperFamilySSF466891.79E-13201253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-24201253IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-23203253IPR006447Myb domain, plants
PfamPF002493.9E-6205253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDSTERVRRC KEYVEALEAE RRKIQVFQRE LPLCLQLVTQ TIETVKQQME SENVRSDDGP  60
VLEEFIPLKP SLSSTSEEES ALHESKKRES SCDRKPDWLQ SVQLWNQHPD LTFPVEPPRK  120
PIAVSAKKIG GAFLPFEREK QVPLPLSSAT PQIVSCIASG SGEKEKEKEK EKEKDKEKEK  180
EKEKEKEKEK EKEEGQSSQS HRKARRCWSP ELHRRFLDAL RQLGGSQAAT PKQIRELMKV  240
DGLTNDEVKS HLQLID*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087852.10.0myb family transcription factor EFM-like
SwissprotQ6Z8693e-75NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A199UWK91e-145A0A199UWK9_ANACO; Two-component response regulator ORR24
STRINGXP_008799311.19e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-62G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]