PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031432.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 240aa    MW: 26656.1 Da    PI: 7.1972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031432.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-1397140755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  e+Er+RR+++N+++  Lr+++P+ +      K++Ka+i + A++YI++Lq
  Aco031432.1  97 EMERNRRRKLNERLYALRSVVPNiS------KMDKASIIKDAIDYIQELQ 140
                  89*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-1889155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.28890139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-1593144No hitNo description
SMARTSM003538.0E-1796145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-1197140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1697156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAVVFPPKEK RKQKQKQKQR KRESGCQNME EMDPEYNFYW ETKRFFENEE LDSMWGLEEA  60
MSSYYDSSSP EGSGSGNSGG GGGGASSSTA AALKSIEMER NRRRKLNERL YALRSVVPNI  120
SKMDKASIIK DAIDYIQELQ EQERRLLEDL SHLQATADKK ESAAGGADDF GLSRGRKKMK  180
STAPTSPPVE IVDLGVAEVG DKIMVVSITC QKRKDTVAKV CEALESLDLK IITANITSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1593140754Transcription factor MYC2
5gnj_B6e-1593140754Transcription factor MYC2
5gnj_E6e-1593140754Transcription factor MYC2
5gnj_F6e-1593140754Transcription factor MYC2
5gnj_G6e-1593140754Transcription factor MYC2
5gnj_I6e-1593140754Transcription factor MYC2
5gnj_M6e-1593140754Transcription factor MYC2
5gnj_N6e-1593140754Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11021RKQKQKQKQRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081389.11e-177transcription factor bHLH35-like, partial
TrEMBLA0A199VRP41e-131A0A199VRP4_ANACO; Transcription factor bHLH35
STRINGXP_008811438.19e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-37bHLH family protein