PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco031477.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 330aa MW: 35544.6 Da PI: 10.6637

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco031477.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.8	1.7e-31	233	291	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+v+++tYegeH+h+ Aco031477.1 233 ADEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERAPDDPSVLIVTYEGEHRHS 291 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.5E-17	176	230	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.0E-33	220	291	IPR003657	WRKY domain
PROSITE profile	PS50811	30.366	227	293	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	229	292	IPR003657	WRKY domain
SMART	SM00774	8.9E-38	232	292	IPR003657	WRKY domain
Pfam	PF03106	8.4E-27	234	290	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:1990841	Molecular Function	promoter-specific chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAVDLMGHAK MNEQMVIQEA AAAGIRGMER LILQISHHEE PSPSPSPSSQ MQMDCREVTE 60 LTVSKFKNLI ALLNRTGHAR FRRGPPAPPP PPPPPPRPQA LTLAPPPPKA RTLDFARPAM 120 SSVSAPMSSS SSSFLSSVTA GDGSVSNGGQ QQPVGPLALR LVPAGWKPPL SVAPLKRKCD 180 AHAHAHAHAH SEDVAGKYGV NGGRCHCSKR RKLRVRKTIR VPAISAKAAD IPADEYSWRK 240 YGQKPIKGSP YPRGYYKCSS LRGCPARKHV ERAPDDPSVL IVTYEGEHRH SLNPQHNHNP 300 NLLLLSSRSN NSSPSAPTAP LTIDSFRPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	220	294	2	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.
UniProt	Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269\|PubMed:16623886}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00464	DAP	Transfer from AT4G31550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269\|PubMed:15618416, ECO:0000269\|PubMed:16623886}.
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081192.1	0.0	WRKY transcription factor WRKY51-like
Swissprot	Q0JEE2	7e-96	WRK51_ORYSJ; WRKY transcription factor WRKY51
Swissprot	Q9SV15	7e-96	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A199UUD8	1e-173	A0A199UUD8_ANACO; Putative WRKY transcription factor 11
STRING	XP_008801524.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	3e-57	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Aco031477.1

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Xie Z, et al. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J., 2006. 46(2): p. 231-42 [PMID:16623886] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang ZL, et al. A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells. Plant Mol. Biol., 2009. 70(1-2): p. 139-51 [PMID:19199048] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Hwang SH, et al. OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae. Plant Cell Rep., 2016. 35(9): p. 1975-85 [PMID:27300023] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]