PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031773.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 170aa    MW: 18962.9 Da    PI: 4.4828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031773.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-091242448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia +++ gRt++++k++w+++l
      Aco031773.1  1 WSLIAGRLP-GRTDNEIKNHWNTHL 24
                     *********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.95E-7124No hitNo description
PROSITE profilePS5129417.304128IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-12124IPR009057Homeodomain-like
SuperFamilySSF466898.97E-7127IPR009057Homeodomain-like
PfamPF002491.0E-6124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
WSLIAGRLPG RTDNEIKNHW NTHLSKRSLT IDDLNLKLNH NLGLSHMHRD SSQGFAAAQL  60
RGNIAEWLTT NDFEPANLSS ELPKFEFDFE TLFDFMPRTC DNQNVGGGGG GSSSELGVKD  120
YAIIGHDGYM INEDDGDGFF NLNHFGDPPQ IGALDQLTNF QDYEMKTVIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081728.11e-118transcription factor MYB80-like, partial
RefseqXP_020084018.11e-118transcription factor MYB57-like
TrEMBLA0A199V7381e-116A0A199V738_ANACO; Transcription factor TT2 (Fragment)
STRINGXP_008778866.19e-31(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17778510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-11myb domain protein 5