PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco031813.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 272aa MW: 29966.1 Da PI: 9.5877

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco031813.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	180.1	1.7e-55	1	216	6	214
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaI 102 +ecA+av+++d ++q+l++ l+el+s +gdp q++aayf+++L arl++s++++ ++l++ +++ + e++ + l f+e+sP+ f+h++aN aI Aco031813.1 1 MECARAVAARDSGRVQQLMWMLNELSSAYGDPEQKIAAYFLQGLFARLTSSGPRTLRTLSSAADRAAS-FESTRRTALrFQELSPWSSFGHVAANGAI 97 69*******************************************************999998544.3333333336*************** PP GRAS 103 leavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.....vakrledlele 192 lea+ + +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++p+ ++ ++e+g+r++kfA+ +gvpf+f+++ +a l++l+l+ Aco031813.1 98 LEAFLEGgaQRLHILDLSSTFCTQWPTLLEALATRSaDDTPHLTITTVVPPA--LQRVMREIGQRMEKFARLMGVPFRFSAVhpppsAAGGLAELDLD 193 965445************************889*******77..99**********************999866779*** PP GRAS 193 eLrvkp.gEalaVnlvlqlhrll 214 +L+++ g laVn+v +l + Aco031813.1 194 SLDLRGdGALLAVNCVGALRGVS 216 *978899***9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.005	1	271	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.6E-53	1	216	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MECARAVAAR DSGRVQQLMW MLNELSSAYG DPEQKIAAYF LQGLFARLTS SGPRTLRTLS 60 SAADRAASFE STRRTALRFQ ELSPWSSFGH VAANGAILEA FLEGGAQRLH ILDLSSTFCT 120 QWPTLLEALA TRSADDTPHL TITTVVPPAL QRVMREIGQR MEKFARLMGV PFRFSAVHPP 180 PSAAGGLAEL DLDSLDLRGD GALLAVNCVG ALRGVSPERE RERGRSKIGG DISSRRKGER 240 ERGKITHKET RPNYRTSDFY DRNIDIFLLI F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	1e-84	1	216	92	309	Protein SHORT-ROOT
5b3h_B	3e-85	1	216	38	255	Protein SHORT-ROOT
5b3h_E	3e-85	1	216	38	255	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269\|PubMed:17446396}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081651.1	0.0	protein SHORT-ROOT 1-like, partial
Swissprot	Q8H2X8	1e-112	SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBL	A0A199V0B2	1e-153	A0A199V0B2_ANACO; Protein SHORT-ROOT 1
STRING	XP_008787198.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3526	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	1e-79	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aco031813.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]