PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy001371
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 30879.3 Da    PI: 9.6646
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58468238PU_unrefUnigeneView CDS
PUT-171a-Arachis_hypogaea-25644PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-313786150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Ahy001371 37 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 86
               79***********************************************8 PP
2K-box105.47.1e-351052014100
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +s +s++ea+++++qqe++kLk++i+++q+ +Rh+lGe L++LslkeL++Le++Lek+l+++Rs+K+e ll+++e +qk+e elq++n+ Lr+k+ e
  Ahy001371 105 TSAESVSEANTQYYQQESTKLKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEVEFMQKREIELQNHNNFLRAKIGE 201
                455569****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-422988IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.9642989IPR002100Transcription factor, MADS-box
CDDcd002657.03E-433099No hitNo description
SuperFamilySSF554556.15E-3330107IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-333151IPR002100Transcription factor, MADS-box
PfamPF003191.2E-263885IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-335166IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-336687IPR002100Transcription factor, MADS-box
PfamPF014862.3E-24112199IPR002487Transcription factor, K-box
PROSITE profilePS5129714.606115205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
XELPHQSQSG GGGDAHRIDH EGSSSQKRMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA  60
YELSVLCDAE VALVVFSSRG RLYEYANNSV RATIERYKKA YSTSTSAESV SEANTQYYQQ  120
ESTKLKRQIR EIQNLNRHIL GEALSTLSLK ELKNLESRLE KGLSRVRSRK HETLLAEVEF  180
MQKREIELQN HNNFLRAKIG EFERAQQQQH QQEQNFLMAP GGGTICDTIA SSQQPPPPFD  240
XQLLLGPAHQ YCCLIEGGGN QWKFKNSLHI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-212997169Myocyte-specific enhancer factor 2B
1tqe_Q9e-212997169Myocyte-specific enhancer factor 2B
1tqe_R9e-212997169Myocyte-specific enhancer factor 2B
1tqe_S9e-212997169Myocyte-specific enhancer factor 2B
5f28_A1e-202997169MEF2C
5f28_B1e-202997169MEF2C
5f28_C1e-202997169MEF2C
5f28_D1e-202997169MEF2C
6byy_A1e-202997169MEF2 CHIMERA
6byy_B1e-202997169MEF2 CHIMERA
6byy_C1e-202997169MEF2 CHIMERA
6byy_D1e-202997169MEF2 CHIMERA
6bz1_A1e-202997169MEF2 CHIMERA
6bz1_B1e-202997169MEF2 CHIMERA
6c9l_A9e-212997169Myocyte-specific enhancer factor 2B
6c9l_B9e-212997169Myocyte-specific enhancer factor 2B
6c9l_C9e-212997169Myocyte-specific enhancer factor 2B
6c9l_D9e-212997169Myocyte-specific enhancer factor 2B
6c9l_E9e-212997169Myocyte-specific enhancer factor 2B
6c9l_F9e-212997169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025626279.11e-166agamous-like MADS-box protein AGL5
RefseqXP_025626280.11e-166agamous-like MADS-box protein AGL5
SwissprotQ93XH41e-105MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445AM031e-164A0A445AM03_ARAHY; Uncharacterized protein
STRINGGLYMA02G45730.41e-118(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.12e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]