PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy003435

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 403aa MW: 44193.1 Da PI: 7.2961

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-171a-Arachis_hypogaea-5330895	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.4e-07	163	184	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd C +aHg Ahy003435 163 AACPDFRK-GGCKKGDACEYAHG 184 78****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.08	111	148	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-5	159	185	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.896	160	186	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	163	184	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-4	164	186	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	194	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	194	218	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
XANNKTPSNA NKAKTITITN HTNAAMMLGE SHRSNPTVHV PPWPPLLDDP TAEMYSPFSG 60 TGLSVHSDSN AADYSPYYMH EAISALQRYL PSNDVVDDDS DSEAARDIDA PVDAYSCDHF 120 RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKFHY SGAACPDFRK GGCKKGDACE 180 YAHGVFECWL HPARYRTQPC KDGTSCRRRV CFFAHTPEQL RVLPQHSPRS VDSYDGSPLR 240 HAMESSCAKT LPFLSSPGSD SPPAEDSPPM SPANRSLGRS VNVSEMMASL RNLQLSKVKS 300 LPSSWNVPMG SPGYGSPRGP MIRSGFCSLP STPTEGPGGS GVNCFEVWDQ SCCFEEPVME 360 RVESGRGIRA RMFEKLSKEN SLDGSASGSG GAPDVGWVSE LIK

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

XANNKTPSNA NKAKTITITN HTNAAMMLGE SHRSNPTVHV PPWPPLLDDP TAEMYSPFSG  60
TGLSVHSDSN AADYSPYYMH EAISALQRYL PSNDVVDDDS DSEAARDIDA PVDAYSCDHF  120
RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKFHY SGAACPDFRK GGCKKGDACE  180
YAHGVFECWL HPARYRTQPC KDGTSCRRRV CFFAHTPEQL RVLPQHSPRS VDSYDGSPLR  240
HAMESSCAKT LPFLSSPGSD SPPAEDSPPM SPANRSLGRS VNVSEMMASL RNLQLSKVKS  300
LPSSWNVPMG SPGYGSPRGP MIRSGFCSLP STPTEGPGGS GVNCFEVWDQ SCCFEEPVME  360
RVESGRGIRA RMFEKLSKEN SLDGSASGSG GAPDVGWVSE LIK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016189314.1	0.0	zinc finger CCCH domain-containing protein 20
Refseq	XP_025636817.1	0.0	zinc finger CCCH domain-containing protein 20
Swissprot	Q9M0G2	1e-131	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A445A094	0.0	A0A445A094_ARAHY; Uncharacterized protein
STRING	GLYMA08G03540.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-125	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]