PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy003773

Common Name

MYB19

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 300aa MW: 32795.2 Da PI: 8.9636

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58455478	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-3203	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.3e-14	36	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g +t q++s+ qky Ahy003773 36 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 80 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-17	30	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.897	31	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-7	34	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-18	34	83	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-11	35	83	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-11	36	80	IPR001005	SANT/Myb domain
CDD	cd00167	6.29E-9	38	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVTPTPTATT ATTTTATATD ASAKKVRKPY TITKSRESWT DEEHDKFLEA LQLFDRDWKK 60 IEDFVGSKTV IQIRSHAQKY FLKVQKNGTV AHVPPPRPKR KAAHPYPQKA SKNVLMALPA 120 SIAYAPSTNG LAPGYATWDE ASLLVNTGSN KSLTCQDELS NLHGNEADIG SKGITQISNS 180 NLNGVGNSTR KLLSSEIPKQ GKPAPVIHGL PDFAEVYSFI GSVFDPDTNN HVQKLKEMDP 240 INFETVLLLM RNLTVNLSSP EFEPMKNVLL STYDINAMTV GVTAGIDVKK QPNDLSCQTV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016183300.1	0.0	protein REVEILLE 8
Refseq	XP_025632813.1	0.0	protein REVEILLE 8 isoform X1
Refseq	XP_025632814.1	0.0	protein REVEILLE 8 isoform X1
Swissprot	Q8RWU3	1e-134	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	V5T8I9	0.0	V5T8I9_ARAHY; Putative MYB-related protein 19
STRING	XP_007144521.1	1e-177	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-119	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Chen N, et al. Identification of 30 MYB transcription factor genes and analysis of their expression during abiotic stress in peanut (Arachis hypogaea L.). Gene, 2014. 533(1): p. 332-45 [PMID:24013078] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]