PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy005415

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 191aa MW: 21207 Da PI: 6.8366

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S54109417	PU_unref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-26718	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.5e-43	21	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Ahy005415 21 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPENQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAE 120 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.105	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-43	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
XSQSPTSCAP PSPPPPVVVS PCAACKILRR RCVEKCVLAP YFPPTDPLKF TIAHRVFGAS 60 NIIKFLQELP ENQRADAVSS MVYEANARIR DPVYGCAGAI CQLQKQVSEL QAQLAKAQAE 120 LVNMHCQQTN LVALICMEMS TSNTHQSSSH QEQHHMMMIQ PQNNNNNNNH VDMSCFIDDN 180 NLASAWEPLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	12	132	2	122	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	12	132	2	122	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025621274.1	1e-140	LOB domain-containing protein 1
Swissprot	Q9LQR0	3e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A445BD21	1e-139	A0A445BD21_ARAHY; Uncharacterized protein
STRING	AES62228	2e-94	(Medicago truncatula)