PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy005428

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 190aa MW: 21041 Da PI: 10.0391

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-171a-Arachis_hypogaea-5618	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.4	9.6e-29	47	120	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLlq+ k i++ + ++ ++ + Ahy005428 47 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLLQATKLDIDKPPPLQIPPGFAQfhH 120 78*************************************************************77766333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.745	48	106	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.5E-26	48	110	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSSSKSSYQA KQEDDGGGGG GGGGTSSSRQ WTAFRNPRIV RVSRSLGGKD RHSKVCTIRG 60 LRDRRIRLSV PTAIQLYDLQ DRLGLGQPSK VIDWLLQATK LDIDKPPPLQ IPPGFAQFHH 120 QQTLIPLSHH HQFSLGGFYD ANSSRFWDMD SSSISLKGKE SDTITHPAGV ISEKGKWIXT 180 NQHVDENQDX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-17	53	107	1	55	Putative transcription factor PCF6
5zkt_B	1e-17	53	107	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015943543.1	1e-136	transcription factor TCP5
Refseq	XP_015943551.1	1e-136	transcription factor TCP5
Refseq	XP_015943558.1	1e-136	transcription factor TCP5
Refseq	XP_015949865.1	1e-136	transcription factor TCP5-like
Refseq	XP_025617176.1	1e-136	transcription factor TCP5
Refseq	XP_025617182.1	1e-136	transcription factor TCP5
Swissprot	Q9FME3	1e-47	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A445EJQ5	1e-134	A0A445EJQ5_ARAHY; Uncharacterized protein
STRING	XP_004516160.1	5e-70	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-50	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]