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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ahy006443 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 143aa MW: 16850.7 Da PI: 4.1586 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 53.8 | 5.2e-17 | 2 | 44 | 41 | 84 |
trihelix 41 rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
g++rs+k+Ckekwen+nk++kk+ke++k+r e+s+tcpyf++
Ahy006443 2 LGYNRSAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHE 44
59****************************8.78999*****97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 2.5E-10 | 2 | 47 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 143 aa Download sequence Send to blast |
XLGYNRSAKR CKEKWENINK YFKKVKESNK QRREDSKTCP YFHEPEALYK DKISNNNNNN 60 TFGSFQNNME PLMVQPEQQW RPPPEPNKDN NNASNEDEEE EYDDDGVEEE EEEEEGDSVG 120 EEEEGLNRYQ IVTNKVSSVD TVE |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025702206.1 | 1e-94 | trihelix transcription factor GT-2 | ||||
| Swissprot | Q39117 | 6e-25 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
| TrEMBL | A0A445CYR4 | 3e-93 | A0A445CYR4_ARAHY; Uncharacterized protein | ||||
| STRING | GLYMA20G30650.1 | 2e-44 | (Glycine max) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G76890.2 | 1e-24 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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