PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy007546
Common NameERF5
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 291aa    MW: 32420.3 Da    PI: 8.8192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59524244PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-20859PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19110159255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr++  +g+Wv+eIr p++   r+r +lg+f taeeAa a+++a+ kl+g
  Ahy007546 110 LYRGVRQRQ-WGKWVSEIRLPKN---RTRLWLGTFETAEEAALAYDKAAFKLRG 159
                59****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.04E-33109169No hitNo description
SuperFamilySSF541711.96E-22110167IPR016177DNA-binding domain
PROSITE profilePS5103223.011110167IPR001471AP2/ERF domain
SMARTSM003804.1E-38110173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32110168IPR001471AP2/ERF domain
PfamPF008479.1E-13111159IPR001471AP2/ERF domain
PRINTSPR003672.8E-11111122IPR001471AP2/ERF domain
PRINTSPR003672.8E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
LPSSSNSHLP STSTTLNSSS YYNPSINFYS SSPQPDFYTQ YGCPSMMTPL FPSRLSNSQN  60
FIGFEQPPFS SIGLNYQIQA QSQTQQSNTL SFLSPKPIPM KQGPPKPTKL YRGVRQRQWG  120
KWVSEIRLPK NRTRLWLGTF ETAEEAALAY DKAAFKLRGD FAKLNFPNLK HHGSCILGGG  180
FGGDRALLRP LHSAVDAKLD AICENLSQIR KQGKQGKKPV MRLKSKSKAT TPNVEGDDDG  240
CFNVESEEAS AGSSPLSDLT FDDVSESQWD APSEHFYLQK FPSYEINWDS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22109167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166751.10.0ethylene-responsive transcription factor RAP2-4
RefseqXP_025665790.10.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E42e-70RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLK0FGJ30.0K0FGJ3_ARAHY; Ethylene-responsive element binding factor 5
STRINGGLYMA06G11010.19e-92(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-60related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]