PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy007582

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 218aa MW: 24297.7 Da PI: 10.7517

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58462531	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4e-06	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Ahy007582 83 FVCEVCNKGFQREQNLQLHRRGH 105 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-6	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.43E-5	82	105	No hit	No description
PROSITE profile	PS50157	11.094	83	105	IPR007087	Zinc finger, C2H2
Pfam	PF12171	1.1E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	125	155	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.43E-5	155	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAATSSSSTP FFQIRQENHH ENLISQQQQQ LLQSSSTTTS APPPPPPPPL PQKKRRNHAA 60 GTPYPGAEVI ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPNKEP 120 KRKVYLCPEP TCVHHHPSRA LGDLTGIKKH FSRKHGEKKW KCHKCSKKYA VQSDWKAPPR 180 PAVPKSIGAT AAPSSPGVTV SSLTESFCDA LAHRKCIX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016181115.1	1e-104	protein indeterminate-domain 5, chloroplastic isoform X1
Refseq	XP_020968622.1	1e-104	protein indeterminate-domain 5, chloroplastic isoform X1
Refseq	XP_025681962.1	1e-104	protein indeterminate-domain 5, chloroplastic
Refseq	XP_025681963.1	1e-104	protein indeterminate-domain 5, chloroplastic
Swissprot	Q8GYC1	2e-74	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A396JPT4	3e-88	A0A396JPT4_MEDTR; Putative transcription factor C2H2 family
STRING	GLYMA07G19470.2	4e-85	(Glycine max)
STRING	XP_007153117.1	3e-85	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	5e-64	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]