PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy007779

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ZF-HD

Protein Properties

Length: 250aa MW: 26927.9 Da PI: 7.1251

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59548827	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.9	4.8e-33	60	114	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Ahy007779 60 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETE 114 679***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.8E-30	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.4E-30	62	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-22	62	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.576	63	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.66E-15	186	250	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-26	188	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.4E-21	199	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEFDEQEEQE EELCVPGGTG YDPLGNPTRV KMSGSEPMLV VQPMTVRNNN NNNSSSNMVK 60 PRYRECLKNH AVGIGGHALD GCGEFMPAGT EGTLDALKCA ACNCHRNFHR KETELAGAGP 120 GGGGPYLLTH HPHHHQPPPF AAYYRTPAGY LHVSGGQQRA GTLALPSTSG AGGGGTARDF 180 EQEDVSGGGG GGGGGSSSRK RFRTKFTQEQ KEKMLELAER LGWRIQKHDE GAVQEFCNET 240 GVKRHVLKVW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-22	198	250	16	68	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	195	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025651048.1	0.0	zinc-finger homeodomain protein 1-like
Refseq	XP_025697707.1	0.0	zinc-finger homeodomain protein 1-like
Swissprot	A2Z259	4e-69	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	4e-69	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A444WVZ6	0.0	A0A444WVZ6_ARAHY; Uncharacterized protein
STRING	GLYMA02G04550.2	7e-93	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-53	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]