PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy007831
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 281aa    MW: 31548.4 Da    PI: 9.51
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59521235PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07178200527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C++f +tGtC  G rCk +H++
  Ahy007831 178 ICPTFEATGTCTKGTRCKLHHPE 200
                6*****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.616998IPR000571Zinc finger, CCCH-type
SMARTSM003560.0176997IPR000571Zinc finger, CCCH-type
SMARTSM003569.798122IPR000571Zinc finger, CCCH-type
SMARTSM003560.051124149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.07124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.563151172IPR000571Zinc finger, CCCH-type
SMARTSM003560.11151177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76173201IPR000571Zinc finger, CCCH-type
SMARTSM003560.45178200IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4178200IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
XDESLSSATA DSGLAVKRAY IPRRLVIGND EYVRIGNGNQ LIRDPKKRTR KLANEKVRWS  60
LHTARQRLAR KQKYCQFFTR FGKCNKEGGK CPYVHDPSKI AVCTKFLNGL CSTPSCKLTH  120
KVIPERMPDC SYFLQGLCTN RNCPYRHVNV NPKASVCEGF LKGYCADGNE CRKKHSYICP  180
TFEATGTCTK GTRCKLHHPE KQKGKKRKRS GDQNNSNSRG RYFASVPIDV SEAGIVVIPG  240
QRDQSDDLEG ELTDYISLQD DYTKTVGQSL ALTLCDSDSL X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C2e-157519942168Cleavage and polyadenylation specificity factor subunit 4
6fbs_C6e-167519941167Cleavage and polyadenylation specificity factor subunit 4
6fuw_C6e-167519941167Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167014.10.0uncharacterized protein LOC107609527
SwissprotQ3ED781e-128C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A445CDC40.0A0A445CDC4_ARAHY; Uncharacterized protein
STRINGGLYMA14G24710.21e-150(Glycine max)
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]