PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy007955

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 238aa MW: 26547 Da PI: 8.5267

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58453618	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	3.9e-13	64	110	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +k+L Ahy007955 64 RNHKEAEKRRRERINSHLARLRTLLPCN-----SKTDKASLLAKVVQRVKEL 110 58***********************8.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.663	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.61E-10	64	113	No hit	No description
Pfam	PF00010	1.2E-10	64	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-14	65	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-15	65	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.0E-4	149	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDHNNSDLFQ LLGAGAGGGY YPAAAVLMMD HHHQHQVSSD DNMSAIETQA SHHQQQDRAL 60 AALRNHKEAE KRRRERINSH LARLRTLLPC NSKTDKASLL AKVVQRVKEL KQQTSEIITE 120 FETLPSETDE ISVLSTADGG HGGLIFKASL CCEDRSDLIP ELIEILKSLH LKTLRAEMAT 180 LGGRTRNVLV VAADKEHNSI ESIHFLQNSL RSLLERSGSA DRSKRRRAMD RRFTPASS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016182383.1	1e-174	transcription factor bHLH106
Refseq	XP_025684182.1	1e-174	transcription factor bHLH106
Swissprot	Q9LET0	2e-74	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	A0A444X965	1e-173	A0A444X965_ARAHY; Uncharacterized protein
STRING	AES81173	1e-101	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	2e-76	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]