PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy008144

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 568aa MW: 62176 Da PI: 5.7126

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59552157	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	41	62	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lC+ffa G C+ G C+F+H+ Ahy008144 41 TLCKFFAN-GNCRNGKHCRFSHD 62 598888.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-5	37	63	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.164	37	64	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-7	40	62	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-6	42	65	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
XDEYGKGTLD ELTRERENDG RRRDNSFEQG GGHMPSRSGD TLCKFFANGN CRNGKHCRFS 60 HDRQDRSLRD DRWGSNLSGD HQTLDRPKLS DSASPTRRLR SDRWGTDGIM ADKDKVWDSP 120 NRNDIATYDS AKLVEEKPGN IGATEHEQTV WPVKEGWGHS LDQSSVQGEP PFLSDKKEAD 180 HWIADNAGAS IPVSQSVAAD IWPGDAKMSP DWNYRAGSST RTEVEHGQND RGLTQGSTYP 240 ATTEHDRIHV PGQGFNQNVQ NVNLLHLPSC HAVGQNQVTV PILPSRAGIP EGMQKQEVCV 300 EKKYTAEPNI TGEGSSQISS SNPSTQDTVS KEQLAQLSNL SASLAHILGS GQQLPQLYAA 360 LNSHNTNDTP SLANTEVPAM PVSNTYVKPD PAVGFVKQYD PMSDSVDLND ADASGICPVI 420 SPSKKSANIE ISSLLSNTGK QNCGDTSKAP SSEEQPAKNE HLTQLQPGQN IEIQKETNEA 480 VADDKPNPQD DHKITKENGP SENIDHNGVE ANKSKDVKGI RAFKFSLVEF VKELLKPTWK 540 EGKITKDDYK TIVKKVVDKV TGTMQGAH

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

XDEYGKGTLD ELTRERENDG RRRDNSFEQG GGHMPSRSGD TLCKFFANGN CRNGKHCRFS  60
HDRQDRSLRD DRWGSNLSGD HQTLDRPKLS DSASPTRRLR SDRWGTDGIM ADKDKVWDSP  120
NRNDIATYDS AKLVEEKPGN IGATEHEQTV WPVKEGWGHS LDQSSVQGEP PFLSDKKEAD  180
HWIADNAGAS IPVSQSVAAD IWPGDAKMSP DWNYRAGSST RTEVEHGQND RGLTQGSTYP  240
ATTEHDRIHV PGQGFNQNVQ NVNLLHLPSC HAVGQNQVTV PILPSRAGIP EGMQKQEVCV  300
EKKYTAEPNI TGEGSSQISS SNPSTQDTVS KEQLAQLSNL SASLAHILGS GQQLPQLYAA  360
LNSHNTNDTP SLANTEVPAM PVSNTYVKPD PAVGFVKQYD PMSDSVDLND ADASGICPVI  420
SPSKKSANIE ISSLLSNTGK QNCGDTSKAP SSEEQPAKNE HLTQLQPGQN IEIQKETNEA  480
VADDKPNPQD DHKITKENGP SENIDHNGVE ANKSKDVKGI RAFKFSLVEF VKELLKPTWK  540
EGKITKDDYK TIVKKVVDKV TGTMQGAH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016180290.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
Refseq	XP_016180291.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
Refseq	XP_020969703.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_025683973.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_025683974.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
Refseq	XP_025683975.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A444X5F5	0.0	A0A444X5F5_ARAHY; Uncharacterized protein
STRING	XP_004502920.1	0.0	(Cicer arietinum)