PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy008948
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 300aa    MW: 32985.8 Da    PI: 10.0033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59552416PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
        Ahy008948  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
                     79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.669161IPR017930Myb domain
SuperFamilySSF466896.73E-15267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-12456IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
PfamPF002493.0E-7555IPR001005SANT/Myb domain
CDDcd116608.67E-18657No hitNo description
SMARTSM005261.1E-11119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.1E-16120198IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.705121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-15122192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.0E-10127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLLPA PKIDNDHMAL STAVRHDENV LETKPLAICG LSLPSHNSKQ  120
QLSRLDDHIL EAIISLKEPR GSDRNAIASY IEENYQSPTN LGKLLRTRLK HMVDIGKIIK  180
VQQRYKISPS STGSEKRRYS SSTLLQEGRP RDSPEAEKSH DVNILSKSQV DADISKAKSM  240
TAQEAAVAAA KAVAEEEKAA IAEAELAARE AEAAEAEAEA AHVFAKAAMK ALKCKTSLIW
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025627394.11e-170telomere repeat-binding factor 2
SwissprotQ9FJW52e-68TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A445AR861e-169A0A445AR86_ARAHY; Uncharacterized protein
STRINGGLYMA05G22500.31e-123(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.26e-61MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]