PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy008969

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 422aa MW: 46452.9 Da PI: 9.0497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59524587	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.7e-53	77	204	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiy++ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+d++v++ +++ Ahy008969 77 LAPGFRFHPTDEELVIYYLKRKVCGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKH-EQR 174 579************************9.99**********75348899999**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vglkktLvf++grap+g++t+Wvmheyrl Ahy008969 175 TVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 204 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-61	67	232	IPR003441	NAC domain
PROSITE profile	PS51005	58.126	77	231	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	79	204	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MGRETLLHPP PPSTTTATAT HTPPPPPPLP SLPSLTQAGP SGGVSASAPS PSASPSSPAI 60 VATTAVATAV AAPPTSLAPG FRFHPTDEEL VIYYLKRKVC GKSFRFDAIS EVDIYRSEPW 120 DLADKSRLKT RDQEWYFFSA LDKKYGNGGR MNRATSKGYW KATGNDRPVK HEQRTVGLKK 180 TLVFHSGRAP DGKRTNWVMH EYRLVDEELE RARSGSSQPQ DAYVLCRVFH KNNIGPPNGQ 240 RYAPFVEEEW DDASALVPGA EPVEDVTVTV AHPLRIESNG RTLCSDRRNN VAQDTQSNNK 300 VPFDVNKLPI ETQSLLAVCK RESMAEFPSP EKEDNSKRQI DEYPLPQTEN TKPISQIYKR 360 RRHYLNVNHS NVNGDSVRTI QEPPCSSTIT TAATTLPTVA TTASTAITNV APKKHFLSAL 420 VX

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MGRETLLHPP PPSTTTATAT HTPPPPPPLP SLPSLTQAGP SGGVSASAPS PSASPSSPAI  60
VATTAVATAV AAPPTSLAPG FRFHPTDEEL VIYYLKRKVC GKSFRFDAIS EVDIYRSEPW  120
DLADKSRLKT RDQEWYFFSA LDKKYGNGGR MNRATSKGYW KATGNDRPVK HEQRTVGLKK  180
TLVFHSGRAP DGKRTNWVMH EYRLVDEELE RARSGSSQPQ DAYVLCRVFH KNNIGPPNGQ  240
RYAPFVEEEW DDASALVPGA EPVEDVTVTV AHPLRIESNG RTLCSDRRNN VAQDTQSNNK  300
VPFDVNKLPI ETQSLLAVCK RESMAEFPSP EKEDNSKRQI DEYPLPQTEN TKPISQIYKR  360
RRHYLNVNHS NVNGDSVRTI QEPPCSSTIT TAATTLPTVA TTASTAITNV APKKHFLSAL  420
VX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-50	76	233	19	170	NAC domain-containing protein 19
3swm_B	4e-50	76	233	19	170	NAC domain-containing protein 19
3swm_C	4e-50	76	233	19	170	NAC domain-containing protein 19
3swm_D	4e-50	76	233	19	170	NAC domain-containing protein 19
3swp_A	4e-50	76	233	19	170	NAC domain-containing protein 19
3swp_B	4e-50	76	233	19	170	NAC domain-containing protein 19
3swp_C	4e-50	76	233	19	170	NAC domain-containing protein 19
3swp_D	4e-50	76	233	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016175593.1	0.0	uncharacterized protein LOC107618149 isoform X1
Refseq	XP_025674693.1	0.0	NAC domain containing protein 50 isoform X1
Swissprot	Q9SQX9	1e-107	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A444XRL2	0.0	A0A444XRL2_ARAHY; Uncharacterized protein
STRING	XP_004496131.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	1e-101	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]