PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy009097

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ZF-HD

Protein Properties

Length: 257aa MW: 27509.9 Da PI: 8.2599

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59541611	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	62	1.2e-19	44	85	4	46
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaAC 46 rY eClkNhA +lGgha+DGCgEfmp+ g++gt +al+CaA Ahy009097 44 GRYMECLKNHALALGGHALDGCGEFMPA-GADGTLDALNCAAA 85 69***********************9.999*******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-12	40	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.5E-17	45	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-18	45	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.336	46	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.57E-15	179	251	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-27	181	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.9E-23	191	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDFEEDFTIP PPPSYADSVP NPSRVKMPTT PPPPPAMPRN SGKGRYMECL KNHALALGGH 60 ALDGCGEFMP AGADGTLDAL NCAAATATAT STARKPLPET VAGDAFLLPH HHYNPFHNHR 120 HHQAFPQFAA CYRAQGAGYL HVSGHQRGGS TPTLALPSIS GGGGGTTQST RDDHEDGSEP 180 SGGGGVGSAS KKRFRTKFSP EQKEKMTVFA ESVGWKLQKH DEVAVQGFCD EVEVGVKRNV 240 LKVWMHNHKN TLAIKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-24	190	251	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016190274.1	1e-147	zinc-finger homeodomain protein 2-like
Refseq	XP_025638732.1	1e-147	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	3e-51	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A444ZVG5	1e-145	A0A444ZVG5_ARAHY; Uncharacterized protein
STRING	GLYMA02G04550.2	2e-71	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	8e-41	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]