PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy009128
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 250aa    MW: 27530.6 Da    PI: 7.671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58468288PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12424626
               -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
               C++++rtG Ck+G++CkF+H+
  Ahy009128  4 CPYYMRTGSCKFGANCKFNHP 24
               ********************9 PP
2zf-CCCH30.56e-10136162127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++f++tG Ck+ ++CkF+H++
  Ahy009128 136 PGEPECSYFLKTGDCKFKSNCKFHHPK 162
                5799*********************96 PP
3zf-CCCH36.39.2e-12184207326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +  C++++r+G+Ck+G+ CkF H+
  Ahy009128 184 QNVCSHYSRYGICKFGPACKFDHP 207
                568********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0019125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5323IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10324IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4135162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061135163IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-6179207IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5181208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014181209IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9184207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4186206IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XKQCPYYMRT GSCKFGANCK FNHPDPTSGG RVGDSVSGFG NGNYVPLQGA SQPSGPSWSS  60
SKTLNDTAPF VPMMLSPSQA VSPRSPEWNG YQAPVYLSER SMHPPSAYVM NNPTIETPMY  120
MHQPKQTPIE EFPERPGEPE CSYFLKTGDC KFKSNCKFHH PKNRVARIPP CNLSDKGLPL  180
RPDQNVCSHY SRYGICKFGP ACKFDHPVIN PSPPSSPGLD QQTSYADTPN EMTTMEGNGD  240
ANDEAIRQPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954506.10.0zinc finger CCCH domain-containing protein 43 isoform X1
RefseqXP_025688562.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM45e-86C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A445DWR00.0A0A445DWR0_ARAHY; Uncharacterized protein
STRINGGLYMA17G13580.11e-124(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-83C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]