PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy009140

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 280aa MW: 30864.6 Da PI: 6.9531

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59541531	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.8e-20	48	103	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk Ahy009140 48 PKRQMKTPFQLETLEKAYALETYPSETMRAELSQKLGLSDRQLQMWFCHRRLKDKK 103 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-20	27	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-18	33	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	44	104	IPR001356	Homeobox domain
SMART	SM00389	5.5E-18	46	108	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-17	48	103	IPR001356	Homeobox domain
CDD	cd00086	3.25E-14	49	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEGEAASDAE IENNNTQKRE DAVGDNSNEN NNGSNSKIGN SNEGQSKPKR QMKTPFQLET 60 LEKAYALETY PSETMRAELS QKLGLSDRQL QMWFCHRRLK DKKDLPPKKQ KKAVPAPVPV 120 PVPVPAPPVP DSPPDLRLGP EHVNEYGSGS GSGSSPLTRP EFRNVVPRGG MLGYYEPPKA 180 MMELRAIACV EAQLGQPLRD DGPILGVEFD PLPPGAFGAP IAVTEQQKRP SLAYDSKMYE 240 RHDVRTNKAM ARTLPEYPFL PNQPGIRSDA FGQLNPPHLX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015943015.1	0.0	homeobox-DDT domain protein RLT1
Refseq	XP_025621943.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_025621944.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	2e-59	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A445BBM8	0.0	A0A445BBM8_ARAHY; Uncharacterized protein
STRING	GLYMA13G30860.1	1e-110	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	7e-25	Homeodomain-like transcriptional regulator