PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy009220

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ERF

Protein Properties

Length: 349aa MW: 37843.3 Da PI: 6.7772

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58443089	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-27048	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.1e-20	166	215	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Ahy009220 166 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 215 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.12E-34	165	225	No hit	No description
SMART	SM00380	4.0E-38	166	229	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-23	166	224	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.143	166	223	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.3E-32	166	224	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-14	167	215	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	167	178	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	189	205	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MAAMMDFYSN TQLQYSDPFR GSELMEVLEP FIKSSSTTPS PSPSTSPSPP SSTSSPSTSY 60 PSSFYFQSSS PSPCLPPQQP CFLSNGLPMT QNLLGFGTQP TSTTSTTSLL GLNHLTPSQI 120 NQIQAQIQIQ AQPWQTQHLN SCVSFLGPKP IPMKHVGSTA SKPTKLYRGV RQRHWGKWVA 180 EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGDFARL NFPNLRHNGS SVGGDFGEYK 240 PLHSSVDAKL QAICEGLAEM QKQGKTEKTK RSKAGAAGSK AAVSKPAAED VKACCKVEEE 300 AAASPPESDG GSSEDSSPLS DLTFGDVDDV GDNFNLQKFP SYEIDWDSL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MAAMMDFYSN TQLQYSDPFR GSELMEVLEP FIKSSSTTPS PSPSTSPSPP SSTSSPSTSY  60
PSSFYFQSSS PSPCLPPQQP CFLSNGLPMT QNLLGFGTQP TSTTSTTSLL GLNHLTPSQI  120
NQIQAQIQIQ AQPWQTQHLN SCVSFLGPKP IPMKHVGSTA SKPTKLYRGV RQRHWGKWVA  180
EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGDFARL NFPNLRHNGS SVGGDFGEYK  240
PLHSSVDAKL QAICEGLAEM QKQGKTEKTK RSKAGAAGSK AAVSKPAAED VKACCKVEEE  300
AAASPPESDG GSSEDSSPLS DLTFGDVDDV GDNFNLQKFP SYEIDWDSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-21	165	223	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934677.1	0.0	ethylene-responsive transcription factor RAP2-13
Refseq	XP_025613101.1	0.0	ethylene-responsive transcription factor RAP2-13
Swissprot	Q8H1E4	1e-95	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A1L4AAM0	0.0	A0A1L4AAM0_ARAHY; Dehydration-responsive element-binding protein 1
STRING	GLYMA06G11010.1	1e-121	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	4e-61	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]