PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy010157
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 271aa    MW: 30553.5 Da    PI: 6.2297
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58472806PU_refUnigeneView CDS
gnl|UG|Ahy#S58473457PU_unrefUnigeneView CDS
PUT-171a-Arachis_hypogaea-10203PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.21.4e-54881921102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql+ fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d+fdflvdi+p
  Ahy010157  88 QLQLFWANQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIP 187
                89******988889************************************************************************************** PP

      NF-YC  98 rdelk 102
                rdelk
  Ahy010157 188 RDELK 192
                **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.93E-3467182IPR009072Histone-fold
PfamPF008082.4E-21110173IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-37111188IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDKSEQTQQQ QQQQQQQQQH VIGVAASASQ MAYSSHYPTA PMMASGTPAV VVPSPTQSPT  60
AFSNSPHQLA YQQAQHFHHQ QQQQQQQQLQ LFWANQMQEI EQTIDFKNHS LPLARIKKIM  120
KADEDVRMIS AEAPVIFAKA CEMFILELTL RSWIHTEENK RRTLQKNDIA AAISRNDVFD  180
FLVDIIPRDE LKEEGLGIAK ATIPIVGSPA DMPYYYVSPQ HPVGPPGMIM GKPVDQAALY  240
STQQPRAPMA FMPWPQAPSQ QQPPQQEQTD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5796188395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171460.10.0nuclear transcription factor Y subunit C-2
RefseqXP_020965222.10.0nuclear transcription factor Y subunit C-2
RefseqXP_025672036.10.0nuclear transcription factor Y subunit C-2
RefseqXP_025672038.10.0nuclear transcription factor Y subunit C-2
TrEMBLA0A445GYI31e-145A0A445GYI3_GLYSO; Nuclear transcription factor Y subunit C-2 isoform A
TrEMBLC6TNG01e-145C6TNG0_SOYBN; Uncharacterized protein
STRINGGLYMA15G41486.11e-146(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-79nuclear factor Y, subunit C2