PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy010305

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YC

Protein Properties

Length: 171aa MW: 19325.5 Da PI: 7.8044

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58468882	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	149.7	5.9e-47	84	170	1	84
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql+sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t Ahy010305 84 QLQSFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 170 89****99999**********************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.36E-30	76	170	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-37	98	170	IPR009072	Histone-fold
Pfam	PF00808	7.1E-22	106	169	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDPHQGHNQN PSMGVGGSGA QFPYGSNPYQ PNQMTSSPGM VVPPIGTIQS TGQPATAQLG 60 QHQLAYQHIH QQQQQQQQMQ LQQQLQSFWA NQYQEIEKVT DFKNHSLPLA RIKKIMKADE 120 DVRMISAEAP VIFARACEMF ILELTLRSWN HTEENKRRTL QKNDIAAAIT X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-51	92	170	3	81	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015939875.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_016174066.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_016174067.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_016174068.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_020986898.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_025619083.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_025619084.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_025679490.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_025679491.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_025679493.1	1e-122	nuclear transcription factor Y subunit C-3
Refseq	XP_029144863.1	1e-122	nuclear transcription factor Y subunit C-3
Swissprot	Q9ZVL3	7e-56	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A444XLJ4	1e-121	A0A444XLJ4_ARAHY; Uncharacterized protein
STRING	AES82522	7e-92	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	1e-55	nuclear factor Y, subunit C3

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]