PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy010465
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 472aa    MW: 52054.9 Da    PI: 8.0449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58451116PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-3652PU_unrefplantGDBView CDS
PUT-171a-Arachis_hypogaea-3653PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-09165185526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+ ++r G C++Gd+C FaHg
  Ahy010465 165 VCPEYRR-GACSRGDSCEFAHG 185
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-5159189IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6160186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394161187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5164187IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7165185IPR000571Zinc finger, CCCH-type
SMARTSM003562.4195218IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.165195219IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
XSGYYGRGIC TLASSLLPLS FPNTYYHIGY TTKLWPNAKM SICSDQQHHH KFYPSQQLLS  60
PKKSLRDIDV PPRKLLTRRA AAVDAGEMFS DDTLFQKFLP CNNPADDSGS DGDDPYSSDH  120
FRMYEFKVRR CTRSRSHDWT DCPFAHPGEK ARRRDPRRYH YSGTVCPEYR RGACSRGDSC  180
EFAHGVFECW LHPARYRTEA CKDGKNCKRK VCFFAHTPKQ LRILPVTMST SNDISPCKKN  240
KLFLNPSSGS SSNNSCCLFC HHCAGGGGAA AVNSPTSTLL GMSRFSPPLS PSSSATSPPV  300
SPISRLSRYG ACRGGGGGGA SNLSYKDVVN ELMSSLEGLS FSDGLNYSDV SGVSAAKVAT  360
NMPWVDVPLN CEDQQEFIFS PSSPMMMTPT RSCDDDGKFS RFFIGNENRV VAHKSNSDAN  420
ISNDINGANN CPAPDLGWVN XSSDVEVEDD DDEGVKKMVR MISKCKYYGV YC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936324.20.0zinc finger CCCH domain-containing protein 2
TrEMBLA0A445BXF90.0A0A445BXF9_ARAHY; Uncharacterized protein
STRINGGLYMA12G33320.11e-142(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-70C3H family protein